Hi @Jamie Brandwood,
Thank you for posting in this community.
Setting the LegacyAuthProtocolsEnabled to False with Set-SPOTenant will not impact apps or add-ins using Azure ACS for integration with SharePoint Online.
The LegacyAuthProtocolsEnabled property in SharePoint Online determines whether legacy authentication protocols are allowed. Legacy authentication refers to older methods of authentication, such as basic authentication.
The DisableCustomAppAuthentication property in SharePoint Online controls whether custom app authentication using Azure Access Control Service (ACS) app-only access tokens is allowed.
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